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Thermodynamics of Biomolecular Machinery

Date:From 2009-07-29 To 2009-08-07
International coordinators:
Local coordinators:
Wednesday 07/29/2009
09:00:00Karl Freed(Program Talk) Protein folding: Interrelation between secondary and tertiary structure determinationppt
10:00:00Stephen Wallin(Program Talk) Simulating knot formation in protein foldingpdf
11:10:00Pengye Wang(Program Talk) DNA-anticancer drug (cisplatin) interaction and DNA condensationpdf
15:00:00Chao Tang(Program Talk) TBA 
16:00:00Benzhong Lu(Program Talk) Continuum modeling of electrodiffusion around single moleculeppt
Thursday 07/30/2009
09:00:00Huanxiang Zhou(Program Talk) Protein Dynamics, Ligand Binding, and Biological Function 
10:00:00Ben McMahon(Program Talk) Evolution of Signal Transcription Proteins in Bacteria 
11:10:00Yongliang Yang(Program Talk) Drug Screening 
15:00:00Thomas Simonson(Program Talk) Electrostatic interactions in proteinspdf
16:00:00Ming Li(Program Talk) single molecule study on the mechanism of E. coli UvrD-mediatedppt
Friday 07/31/2009
09:00:00Haiyan Liu(Program Talk) Quantify the relations beween force field parameters and simulated conformational equilibriums 
10:00:00Yiqin Gao(Program Talk) TBA 
11:10:00Wei Wang(Program Talk) Protein folding with simplified models and all-atom model 
15:00:00Aihua Xie(Program Talk) From energy landscape to physical mechanism of proton transfer in proteins 
16:00:00Hong Qian(Program Talk) Cellular Dynamics From A Computational Chemistry Perspectiveppt
17:00:00Ray Luo(Program Talk) %% 
Monday 08/03/2009
09:00:00Peer Bork(Program Talk) Predicting Biological Function at different scales 
10:00:00Teresa Head-Gordon(Program Talk) Importance of dynamics in describing enzyme structure and dynamicspdf
11:10:00Yaoqi Zhou(Program Talk) What are the “ 1” and the “ 2” that would lead to the “ 3” - the 3-dimensional structures of proteins? 
15:00:00Hue-Sun Chan(Program Talk) Interplay of Native Topology and Nonnative Interactions in Cooperative and Noncooperative Protein Foldingpdf
16:00:00Robert Mathews(Program Talk) TBA 
17:00:00Wei Wang (UCSD)(Program Talk) Deciphering protein recognition code 
Tuesday 08/04/2009
09:00:00Rebecca Wade(Program Talk) Simulation of protein dynamics and biomolecular recognition 
10:00:00Luhua Lai(Program Talk) Computational design of protein structure and function 
11:10:00Zhaoping Li(Program Talk) Computational vision---a window to our brain眼睛是心灵的窗户--- 从视觉看大脑功能 
14:00:00Uli Nienhaus(Program Talk) Single Molecule Fluorescence Studies of RNA Foldingpdf
15:00:00Xiaoqin Zuo(Program Talk) Structure-based prediction on protein-ligand and protein-protein interactions for rational drug design 
16:00:00Shijie Chen(Program Talk) RNA Folding, anti-HIV Aptamer Design, and Human Telomerase RNA activityppt
17:00:00Zhirong Liu(Program Talk) The speeding effect of intrinsically disordered proteins in coupled folding and bindingpdf
Wednesday 08/05/2009
09:00:00Jose Onuchic(Program Talk) The Energy Landscape for Protein Folding and Function 
10:00:00Dave Thirumalai(Program Talk) TBA 
11:10:00Jin Wang(Program Talk) Landscapes:From Biomolecules to Cell Networks 
12:00:00Wenzhe Ma(Program Talk) TBA 
13:00:00 Lunch break and tour to Great Wall 
Thursday 08/06/2009
09:00:00Rudy Marcus(Program Talk) Einstein Lectureship:Interplay of theory and computations in science--examples drawn from theoretical studies of reaction rates, 'on water' organic reactions, isotope fractionation and single-molecule fluctuations (Nobel laureate)ppt
10:40:00Jianshu Cao(Program Talk) TBA 
11:30:00Stephen Boxer(Program Talk) Electrostatics and Dynamics in Proteins 
14:00:00Xueyu Song(Program Talk) TBA 
15:00:00Yawen Bai(Program Talk) Protein and chromatin folding by NMR-from small proteins to large protein-DNA complexes 
16:00:00Jeff Saven(Program Talk) Theoretical approaches to protein sequence ensembles and design 
Friday 08/07/2009
09:00:00Jiali Gao(Program Talk) X-PolPotential: A QuantalForce Field for Protein Dynamicspdf
10:00:00Uli Hansman(Program Talk) Computer experiments of protein folding 
11:10:00Claus Seide(Program Talk) A dynamical view of biomolecular structure by multiparameter single-molecule fluorescencerar
14:00:00Jianpeng Ma(Program Talk) Refinement of Low-resolution X-ray structures, Empirical Energy Function and Enhanced Sampling Algorithms 
Monday 08/10/2009
09:00:00Stephen Berry(Program Talk) Exploring the energy landscapes and their implications 
10:00:00Stephen Berry(Program Talk) me properties and roles of water in biomolecular systems 
15:00:00Hao Li(Program Talk) TBA 
Tuesday 08/11/2009
09:00:00Zhirong Sun(Program Talk) Bioinformatics and Biological Function 
10:00:00Su Xiao Dong(Program Talk) TBA